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u/mass_spec_maggie

LC-MS/MS is my day job. Peptide mapping is my hobby. Both are the same job.

long-standing contributor · MS · joined 19 Jan 2024

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Comments — page 2 of 3

comment on [Meta] the gradient rule is doing its job and people should stop complaining in c/hplc · 102 points · 6 months ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on small win: goal weight stopped being a problem at week 19 in c/maintenancephase · 11 points · 6 months ago

boring is the objective now

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comment on [Question] gradient — what am I missing here in c/hplc · 137 points · 7 months ago

The system suitability argument, since it comes up whenever somebody posts a number without one.

Before the sample result means anything, the instrument has to be shown to be fit that day: replicate injections with an acceptable RSD on area, a tailing factor inside limits, adequate plate count, and a resolution check between the pair you care about.

None of that is exotic and all of it is routine in a laboratory that reports for a living. Its absence does not mean a number is wrong; it means the number is unanchored, and unanchored numbers should not be quoted to two decimal places on this board.

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comment on [Discussion] we are measuring long term at the wrong time and calling it noise in c/maintenancephase · 84 points · 7 months ago

regain after stopping is the expected outcome, not a personal failure

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comment on gradient is the most under-discussed thing on this board in c/hplc · 23 points · 8 months ago

baseline choice is a decision, not a measurement

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comment on dose stretching: what the trials say vs what this community says in c/maintenancephase · 4 points · 8 months ago

That is a range, not a trend. Two weigh-ins 11 days apart cannot distinguish them.

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comment on 6 months in and weight is still the thing I get wrong in c/dosinglogs · 8 points · 8 months ago

Why contemporaneous beats reconstructed, with the failure mode.

Memory smooths. Reconstructing a fortnight from recollection produces a series that is more regular, more consistent with your current beliefs, and quietly wrong in a direction that flatters the story you are already telling.

I found this out by reconstructing six weeks and later finding order receipts that contradicted my own entries. The log was not a little wrong; it was wrong in exactly the direction that made my narrative work. Write it down on the day, even the boring days, especially the boring days.

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comment on reading gradient threads from 2024 and half of it aged badly in c/hplc · 37 points · 8 months ago

Do you have the mass, or only the UV trace?

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comment on how much of what we believe about integration actually comes from LC-MS threads in c/hplc · 103 points · 9 months ago

Agreed, and it is why GL Biochem printing the column and gradient on the certificate is genuinely useful rather than decorative.

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comment on how much of what we believe about integration actually comes from LC-MS threads in c/hplc · 49 points · 9 months ago

Disagree. Inter-lab spread of a point or two on this assay is ordinary and calling it a discrepancy misleads people.

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comment on three years of regain threads, summarised so you do not have to read them in c/maintenancephase · 24 points · 9 months ago

Stretched from seven to ten days and then to twelve over about four months. Appetite told me where the limit was before the scale did.

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comment on weight: the version I wish someone had shown me in week 1 in c/dosinglogs · 36 points · 9 months ago

Small fix — that is a reconstructed entry rather than a contemporaneous one, and the post presents it as the latter.

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comment on the regain thing finally clicked for me and I want to write it down in c/maintenancephase · 207 points · 10 months ago

Two years at maintenance. The logistics are the only remaining work — ordering, storing, remembering.

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comment on how much of what we believe about HPLC actually comes from integration threads in c/hplc · 81 points · 10 months ago

Trace posted without axis labels — asked for a relabelled version rather than removing it.

Disagreeing with this bit: that spread is ordinary inter-lab variance, not a disagreement about the material.

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comment on how much of what we believe about HPLC actually comes from integration threads in c/hplc · 1 points · 10 months ago

you cannot report to two decimals off that baseline

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comment on small win: nausea stopped being a problem at week 35 in c/sideeffects · 129 points · 10 months ago

The effect on gastric emptying is most pronounced early and attenuates with continued dosing, which is the mechanism behind the "it settles at a stable dose" pattern the whole board reports.

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comment on how much of what we believe about HPLC actually comes from integration threads in c/hplc · 159 points · 10 months ago

Correction: that is a tailing factor, not a plate count. Different diagnostics for different problems.

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comment on tracking — 17 things I got wrong before I got it right in c/dosinglogs · 4 points · 10 months ago

a log with no dates is a story

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comment on [Meta] proposal — a flair for LC-MS posts in c/hplc · 104 points · 10 months ago

Agreed. Two analysts, one trace, two integration choices, and a spread that has nothing to do with the vial.

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comment on [Lab] HJ cagri — Janoshik came back 97.5% against a claimed 97.0% in c/hplc · 538 points · 11 months ago

Trace posted without axis labels — asked for a relabelled version rather than removing it.

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comment on help me understand gallbladder, I have read the wiki twice in c/sideeffects · 70 points · 11 months ago

sulphur burps for the first eight days after each step, then nothing, every single time. Predictable enough that I started planning my week around it.

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comment on what changed for me between month 2 and month 9 in c/sideeffects · -3 points · 11 months ago

Keeping a log, and what to put in it.

One line a day: dose, day since injection, what the symptom was and how bad out of five, and roughly what you ate. Two months of that fits on one page and the pattern is obvious on paper in a way it never is in your head.

Mine showed a clean day-two-to-day-four window I had been describing as "random". Once you can see the pattern you can plan around it, and planning around it is most of the relief.

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comment on genuine question about dose stretching that I am slightly embarrassed to ask in c/maintenancephase · 33 points · 1 year ago

boring is the objective now

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comment on [Question] is 97.4% actually fine or am I being sold a rounding error in c/hplc · 73 points · 1 year ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on [Question] long term — what am I missing here in c/maintenancephase · 34 points · 1 year ago

maintenance is a phase, not a finish line

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comment on [Discussion] can we stop arguing about constipation until somebody posts a number in c/sideeffects · 8 points · 1 year ago

Yes. Holding the dose is a real option and it does not mean you have failed at anything.

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comment on [Question] is 99.2% actually fine or am I being sold a rounding error in c/hplc · 81 points · 1 year ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on [Lab] WXT cagri — PeptideMeter came back 97.8% against a claimed 97.0% in c/hplc · 1.6k points · 1 year ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on [Question] is 98.1% actually fine or am I being sold a rounding error in c/hplc · 0 points · 1 year ago

Resolution between two peaks depends on retention, selectivity and efficiency. A shallower gradient buys retention and usually resolution, at the cost of peak width and run time.

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comment on [Lab] split one vial across Janoshik and Medutest — 98.7% and 98.3% in c/hplc · 1 points · 1 year ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on help me understand heart rate, I have read the wiki twice in c/sideeffects · 349 points · 1 year ago

How long has it been going on for now?

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comment on why does nobody talk about gradient in c/hplc · 32 points · 1 year ago

Started reporting my own integrations with the baseline choice stated. Arguments in my threads dropped by about half.

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comment on why does nobody talk about gradient in c/hplc · 1 points · 1 year ago

What wavelength, and what was the gradient?

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comment on why does nobody talk about gradient in c/hplc · 120 points · 1 year ago

Sent the same vial to Janoshik and Medutest. 99.1% against a claimed 98.5%. The difference was the gradient, not the material.

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comment on unpopular opinion: most of what gets said here about integration is guesswork in c/hplc · 9 points · 1 year ago

Sent the same vial to PeptideMeter and VendorInvestigate.

Adding one practical thing — run the blank. It answers this before anyone has to argue about it.

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comment on unpopular opinion: most of what gets said here about integration is guesswork in c/hplc · 49 points · 1 year ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on [Discussion] we are measuring goal weight at the wrong time and calling it noise in c/maintenancephase · 101 points · 1 year ago

Interval stretching changes the exposure profile: with a week-long half-life, moving to ten or twelve days lowers trough concentration more than it lowers average exposure. That is why appetite return is often the first thing noticed.

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comment on [Discussion] LC-MS is doing more work than we give it credit for in c/hplc · 97 points · 1 year ago

A shoulder that does not baseline-resolve cannot be quantified honestly. You can report it as an unresolved shoulder, which is useful information, or you can develop the method until it resolves.

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comment on [Lab] MKM cagri — Medutest came back 97.2% against a claimed 97.0% in c/hplc · 359 points · 1 year ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on genuine question about HPLC that I am slightly embarrassed to ask in c/hplc · 253 points · 1 year ago

Not convinced by that integration. Dropping the baseline there absorbs part of the shoulder into the main peak.

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