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u/mass_spec_maggie

LC-MS/MS is my day job. Peptide mapping is my hobby. Both are the same job.

long-standing contributor · MS · joined 19 Jan 2024

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comment on why is the sequence written four different ways across four vendor sites in c/researchpeptides · 121 points · 1 days ago

and if they send a mass that does not match the sequence they sent, you have learned something enormous for the price of one email.

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comment on two labs, same vial, 98.1 and 96.4. both right? in c/hplc · 176 points · 2 days ago

and none of the four items on that list touch identity. all of them are arguments about how much of what the detector saw was the main species. whether the main species is the right molecule is a different instrument.

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comment on peak at 4.2 min, nobody can tell me what it is, ideas in c/hplc · 88 points · 3 days ago

send me a vial and i will run it on a lunch break. genuinely. modmail.

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comment on i stopped eating at 70% full and the vomiting stopped entirely in c/sideeffects · 2 points · 3 days ago

smaller meals, earlier, is the boring advice that works

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comment on peak at 4.2 min, nobody can tell me what it is, ideas in c/hplc · 104 points · 3 days ago

the general answer to "what is this peak" is always MS. UV gives you a retention time and a size, which narrows it to a family.

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comment on [Lab] LC-MS confirmed identity but the UV purity is 94%. now what in c/hplc · 118 points · 3 days ago

so the practical read is: correct molecule, honest vendor, old vial. that is a much more actionable conclusion than "94% bad".

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comment on bought a second-hand HPLC. worst best decision of my life. AMA in c/hplc · 96 points · 3 days ago

next purchase should be a used single-quad if you can find one. identity is the question UV cannot answer and you are one instrument away from answering it.

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comment on [Lab] LC-MS confirmed identity but the UV purity is 94%. now what in c/hplc · 108 points · 3 days ago

a 94% that is one identified oxidation product on an old vial and a 94% that is six unknown peaks are not the same material. that is not avoidance, it is the actual difference.

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comment on [Lab] LC-MS confirmed identity but the UV purity is 94%. now what in c/hplc · 187 points · 3 days ago

i can and i should have. edit next day: it is +16 on the parent mass. so an oxidation product, almost certainly methionine, and almost certainly a storage or handling artefact rather than a synthesis failure.

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comment on [Update] week 44 — first stall in eleven months in c/dosinglogs · 18 points · 4 days ago

Same conditions each time for the weigh-in?

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comment on [Log] public log, started week 1, currently week 90, still updating in c/dosinglogs · 3 points · 6 days ago

annotate the weeks where something else changed

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comment on [Correction] you cannot report area% to two decimals off that baseline in c/hplc · 7 points · 6 days ago

Retitled: the original claimed a comparison the post does not actually make.

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comment on [Question] resting heart rate up 7bpm, week 6, is that a thing in c/sideeffects · 22 points · 7 days ago

This. A bad fortnight after a step is expected. A bad quarter is a reason to talk to somebody who knows your history.

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comment on [Explainer] integration decisions change your number more than the sample does in c/hplc · 41 points · 8 days ago

Resolution between two peaks depends on retention, selectivity and efficiency. A shallower gradient buys retention and usually resolution, at the cost of peak width and run time.

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comment on reflux got worse for three weeks then better than baseline in c/sideeffects · 105 points · 9 days ago

Pushback: you changed the dose, the meal timing and the training in the same fortnight, so the attribution is guesswork.

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comment on [Method] 220nm vs 214nm and what you lose at each in c/hplc · -26 points · 11 days ago

Disagree. Inter-lab spread of a point or two on this assay is ordinary and calling it a discrepancy misleads people.

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comment on sulphur burps: a taxonomy, a timeline, and my sincere apologies to my flatmate in c/sideeffects · 6 points · 16 days ago

Reflux was the one that got me. Stopped eating in the three hours before bed and it went from nightly to almost never.

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comment on [Results] two years, weight stable within 3kg, dose at a quarter of peak in c/maintenancephase · 91 points · 22 days ago

The two levers, described properly, because this board mixes them up constantly.

Reducing the dose lowers average exposure while keeping the weekly rhythm. Stretching the interval keeps the dose but lowers the trough between injections, which — with a week-long half-life — is why people notice appetite returning towards the end of a stretched cycle before they see anything on the scale.

The reported pattern here is stretching in small steps, a week to ten days to twelve, with appetite as the signal rather than the scale. Some people find dose reduction more comfortable. Neither is a schedule anybody here can hand you, and the fact that this phase has the least published guidance is exactly why board consensus deserves less weight than usual.

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comment on my gallbladder came out at month 7 and i would still do it again in c/sideeffects · 26 points · 22 days ago

Keeping a log, and what to put in it.

One line a day: dose, day since injection, what the symptom was and how bad out of five, and roughly what you ate. Two months of that fits on one page and the pattern is obvious on paper in a way it never is in your head.

Mine showed a clean day-two-to-day-four window I had been describing as "random". Once you can see the pattern you can plan around it, and planning around it is most of the relief.

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comment on my gallbladder came out at month 7 and i would still do it again in c/sideeffects · 7 points · 22 days ago

Disagree. Severe abdominal pain is not on the list of things to wait out, and this board should not be treating it as one.

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comment on clothes fit the same for 14 months and it is genuinely strange in c/maintenancephase · 91 points · 1 months ago

seven days to ten to twelve is the sequence people here describe

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comment on unpopular opinion: most of what gets said here about log is guesswork in c/dosinglogs · 14 points · 1 months ago

Yes — log what happened rather than what you intended. My retrospective entries were quietly wrong every time.

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comment on genuine question about method development that I am slightly embarrassed to ask in c/hplc · 39 points · 1 months ago

Trace posted without axis labels — asked for a relabelled version rather than removing it.

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comment on how much of what we believe about heart rate actually comes from sulphur burps threads in c/sideeffects · 1 points · 1 months ago

Severe or persistent abdominal pain sits outside the pattern this board can usefully discuss. The honest answer there is that it needs someone who can examine you.

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comment on the method development thing finally clicked for me and I want to write it down in c/hplc · 17 points · 1 months ago

Yes. Retention time is a hypothesis about identity. Mass is the answer.

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comment on regain: what the trials say vs what this community says in c/maintenancephase · 0 points · 1 months ago

The two levers, described properly, because this board mixes them up constantly.

Reducing the dose lowers average exposure while keeping the weekly rhythm. Stretching the interval keeps the dose but lowers the trough between injections, which — with a week-long half-life — is why people notice appetite returning towards the end of a stretched cycle before they see anything on the scale.

The reported pattern here is stretching in small steps, a week to ten days to twelve, with appetite as the signal rather than the scale. Some people find dose reduction more comfortable. Neither is a schedule anybody here can hand you, and the fact that this phase has the least published guidance is exactly why board consensus deserves less weight than usual.

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comment on hair loss: the version I wish someone had shown me in week 1 in c/sideeffects · 886 points · 2 months ago

On buying things to fix side effects, which I did extensively and would not do again.

The interventions that changed anything for me were all behavioural and free: smaller meals, eating slower, stopping food a few hours before sleep, more fibre and considerably more water. The things I bought did nothing I could detect, and I was motivated to detect something.

The other lever, which people forget, is time at dose. Holding rather than stepping is a legitimate plan and it fixed my tolerance where nothing else did.

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comment on three years of method development threads, summarised so you do not have to read them in c/hplc · 310 points · 3 months ago

Method questions stay here; supplier claims go to c/vendorvetting with a document attached.

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comment on [Meta] the LC-MS rule is doing its job and people should stop complaining in c/hplc · 96 points · 3 months ago

Retitled: the original claimed a comparison the post does not actually make.

hplc_hobbyist is right — the integration choice is a decision and it should be stated alongside the result.

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comment on constipation: the version I wish someone had shown me in week 1 in c/sideeffects · 136 points · 3 months ago

How long has it been going on for now?

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comment on [Discussion] can we stop arguing about method development until somebody posts a number in c/hplc · 33 points · 3 months ago

Trace posted without axis labels — asked for a relabelled version rather than removing it.

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comment on my hs-CRP moved and I cannot work out whether heart rate is why in c/sideeffects · 16 points · 3 months ago

sulphur burps are unpleasant and they are not dangerous

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comment on [Discussion] the log advice in here is 3 years out of date in c/dosinglogs · 2 points · 3 months ago

retrospective logs drift, contemporaneous ones do not

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comment on [Question] how do you actually verify gallbladder in c/sideeffects · 498 points · 3 months ago

Keeping a log, and what to put in it.

One line a day: dose, day since injection, what the symptom was and how bad out of five, and roughly what you ate. Two months of that fits on one page and the pattern is obvious on paper in a way it never is in your head.

Mine showed a clean day-two-to-day-four window I had been describing as "random". Once you can see the pattern you can plan around it, and planning around it is most of the relief.

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comment on why does nobody talk about HPLC in c/hplc · 58 points · 4 months ago

Trace posted without axis labels — asked for a relabelled version rather than removing it.

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comment on [Question] how do you actually verify purity in c/hplc · 27 points · 5 months ago

A shoulder that does not baseline-resolve cannot be quantified honestly. You can report it as an unresolved shoulder, which is useful information, or you can develop the method until it resolves.

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comment on [Discussion] can we stop arguing about dose stretching until somebody posts a number in c/maintenancephase · 47 points · 5 months ago

Stretching the interval, reducing the dose, or both?

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comment on [Discussion] can we stop arguing about dose stretching until somebody posts a number in c/maintenancephase · 0 points · 5 months ago

What is the plan if the drift continues for another month?

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